Plant MITE

SE3510376

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6594
Mimulus guttatus
SE3510376
Tc1/Mariner
St3
scaffold_5:12968062-12968349
TA
TACTCCCTCCGTTCCATTTTAATTGTCGTTT

Secondary structure and sequence

TSD TIR

5'

3'

             C   TT  A         TTTA  TTTGCACAAAGATTAAGAATTTTATTGAATGTGTCTTGATTTTAGATAAATGTATGCTTTTAGACTAAAATGACTTTGTCTTATAATTAATAAGAGAGACAAATTAGTT
TACTCCCTCCGTT CAT  TA TTGTCGTTT    GC                                                                                                             
||||||||||||| |||  || |||||||||    ||                                                                                                              
ATGAGGGAGGCAA GTA  AT AACAGCGAA    AC                                                                                                             
             A   TT  A         ----  CTCTTAAAAAAAACAAGGTATAATAGACAGTGAAATTTAAAAGTTGTGAAGTAATTAATGAATTAAAGGTCAAATATGGGAATAATTGAGAGAGGTTATGAGAAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510376

TACTCCCTCCGTTCCATTTTAATTGTCGTTTTTTAGCTTTGCACAAAGATTAAGAATTTTATTGAATGTGTCTTGATTTTAGATAAATGTATGCTTTTAGACTAAAATGACTTTGTCTTATAATTAATAAGAGAGACAAATTAGTTAAAAAAAGAGTATTGGAGAGAGTTAATAAGGGTATAAACTGGAAATTAAGTAATTAATGAAGTGTTGAAAATTTAAAGTGACAGATAATATGGAACAAAAAAAATTCTCCAAAGCGACAAATATTATGAAACGGAGGGAGTA

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