SE3550377

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6595
  • Mimulus guttatus
  • SE3550377
  • PIF/harbinger
  • To2
  • scaffold_8:17121412-17121640
  • TTA
  • AGGCCTTGTTTGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                ----CCAA   A  ATTATATAATCTAATGAAAACCCAATTGTATTACGGGCCATGAAAGAAGGTCCAGTAAATAATCTCCCTAAAAGCCAATATAAGC
  AGGCCTTGTTTGGTTG        CAT AG                                                                                     
  ||||||||||||||||        ||| ||                                                                                      
  TCCGGAGCAAACCAAC        TCA GT                                                                                     
AT                CCCTCTAA   -  ACTAATTGAATTGTTAATCTGAAACGAACTACAAACCGTTTGGGTTATTAAAAGGCTCAGCTGGGCCTTTATAATAAAATAGAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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