SE3520381

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6599
  • Mimulus guttatus
  • SE3520381
  • Mutator
  • M4
  • scaffold_13:3536918-3537609
  • TTTTAATTA
  • TTAATTAGGGTAAATTTCACTTTACCCCCTTGTACTTTGGCTGGATATTACTTTACCCCTTGTATTTTCAATTGCATCGATTTGCCCCCTTGTACTTTGGTTCGATATCACTTTACCCCCTTCTACTCTCAATTCATCGATTTGCCCCCTTGTACTTTGGCTCGATATCACTTTACCCCATTCTACTCTCAATTGCATCGATTTGCCCCCCTTACTTGAAAAATTATTTCAATATGGCCCTCGCCGTTAGTTTTCAGACTTTGAACACCGTTTGATTTAAGTATGAAAATTAC

Secondary structure and sequence

TSD    TIR
5'



3'
 TT    TT                         G                           -       T                                                                                                                A       C                        -                     A                         -     -----                  A          TAAAATG          -                 AAAAAAAAAACA
   TTAA  AGGGTAAATTTCACTTTACCCCCTT TACTTTGGCTGGATATTACTTTACCCC TTGTATT TCAATTGCATCGATTTGCCCCCTTGTACTTTGGTTCGATATCACTTTACCCCCTTCTACTCTCAATTCATCGATTTGCCCCCTTGTACTTTGGCTCGATATCACTTTACCCC TTCTACT TCAATTGCATCGATTTGCCCCCCT TACTTGAAAAATTATTTCAAT TGGCCCTCGCCGTTAGTTTTCAGAC TTTGA     ACACCGTTTGATTTAAGT TGAAAATTAC       TCACCCCTCC AGTTTAAATAATTATTA            
   ||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||     |||||||||||||||||| ||||||||||       |||||||||| |||||||||||||||||            A
   AATT  TCCCATTTAAGGTGAAATGGGGGAA ATGAAACCGACCTATAGTGAAATGGGG AACATAA AGTTAACGTAGCTAAACGGGGGAACATGAAACCAAGCTATAGTGAAATGGGGGAAGATGAGAGTTAAGTAGCTAAACGGGGGAACATGAAACCGAGCTATAGTGAAATGGGG AAGATGA AGTTAACGTAGCTAAACGGGGGGA ATGAACTTTTTAATAGAGTTA ACCGGGAGCGGCAATCAAAAGTTTG AAACT     TGTGGCAAACTAGATTCA ACTTTTAATG       GGTGGGGAGG TCAAATTTATTAATAAT            
AAT    -T                         A                           G       C                                                                                                                G       T                        C                     C                         T     GGAAT                  A          TTCTTTT          G                 AATATAAAAAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End