SE3520383

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6601
  • Mimulus guttatus
  • SE3520383
  • Mutator
  • M14
  • scaffold_14:14241773-14242018
  • ATTAATATA
  • ATATATGGGTAAATTACAACCGCCCCCTGAGGTAAGGTCTATTTATGAAAAAACCC

Secondary structure and sequence

TSD    TIR
5'



3'
ATTA    --           A        -            GTC  T    G         CTCATTATTTCAT           -     A  A                   A  A    TT
    ATAT  ATGGGTAAATT CAACCGCC CCCTGAGGTAAG   TA TTAT AAAAAACCC             AATTACATCCA TCCCT CA TTTGTAGATTTCTTACATT AC CCCT  
    ||||  ||||||||||| |||||||| ||||||||||||   || |||| |||||||||             ||||||||||| ||||| || ||||||||||||||||||| || ||||  T
    TATA  TACCCATTTAA GTTGGTGG GGGGTTCCATTT   AT AATG TTTTTTGGG             TTAATGTAGGT GGGGA GT AAACATTTAAGGAATGTAG TG GGGA  
  TA    AT           C        A            AAC  T    -         TAAGAAAAAATCT           C     C  C                   A  C    CG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End