SE3520384

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6602
  • Mimulus guttatus
  • SE3520384
  • Mutator
  • M14
  • scaffold_7:17529872-17530121
  • TTTAGAATA
  • AGGGTAAATTACAACACCCCTGAGCTAAGGTTTATTTACGAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAGAAT               -   --      C      T  T          AAAAA     A    -CCCAT      TT   --      AAA        --    A      AA AA   TT
        AGGGTAAATTACAAC ACC  CCTGAG TAAGGT TA TTACGAAAAA     CCTTT TTTT      AATTAC  CCA  CCCCTG   TTTGTAGA  TTCT TACATT  C  CCT  
        ||||||||||||||| |||  |||||| |||||| || ||||||||||     ||||| ||||      ||||||  |||  ||||||   ||||||||  |||| ||||||  |  |||  T
        TCCTATTTAATGTTG TGG  GGACTC ATTTCA AT AATGTTTTTT     GGAAA AAAA      TTAATG  GGT  GGGGAC   AAACATTT  AAGA ATGTAG  G  GGA  
ATAAGATT               G   AG      T      C  T          --GAG     G    AACTCT      TT   TC      GTC        TA    -      GC GG   TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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