SE3520385

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6603
  • Mimulus guttatus
  • SE3520385
  • Mutator
  • M2
  • scaffold_5:13507691-13507959
  • TTAAATATA
  • AGGGCAAATTAGGGCCAACCCCCTAAGATAAGGCCAAATTACAAAAACCCCCCTCCTATTTGGGTAATTACAACCACCCCCTAAACTATGTATTGTCTTACACTTCCACCCTTACGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAATAT    C      G     A      A  A     C             CC   C  C                A         -A           G       CTT  A     -------AC    TCA
        AGGG AAATTA GGCCA CCCCCT AG TAAGG CAAATTACAAAAA  CCC TC TATTTGGGTAATTACA CCACCCCCT  AACTATGTATT TCTTACA   CC CCCTT         GGTA   
        |||| |||||| ||||| |||||| || ||||| |||||||||||||  ||| || |||||||||||||||| |||||||||  ||||||||||| |||||||   || |||||         ||||   A
        TCCC TTTAAT CCGGT GGGGGA TC ATTCC GTTTAATGTTTTT  GGG AG ATAAACCCATTAATGT GGTGGGGGG  TTGATACATAA AGAATGT   GG GGGAA         CCAT   
ATATAAAT    A      G     G      C  C     A             TT   A  T                A         AG           A       TTT  G     GTATATCAT    TTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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