SE3520386

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6604
  • Mimulus guttatus
  • SE3520386
  • Mutator
  • M3
  • scaffold_4:9675335-9675735
  • TTACGAAAA
  • AAGGGTAAATTACATCCACACCCCCGAGGTATGCTTAAATAACTTTAAGGTCACTGTGGTATCGATAATTACACTCACCCCCTAAAACATAGTTAGAAGATCTAATGAGATAATGCATTGGATATGTTATTCCGATAGAATTCTAATGGACTATTAGTTTCAGGAAGTGATGGAGACAACAAAGAG

Secondary structure and sequence

TSD    TIR
5'



3'
TTACGAA                       CC                 C         A     G                C     CTA               A       A       C                  A    A                G   C  GA    A           AA   CCATGTCA
       AAGGGTAAATTACATCCACACCC  GAGGTATGCTTAAATAA TTTAAGGTC CTGTG TATCGATAATTACACT ACCCC   AAACATAGTTAGAAG TCTAATG GATAATG ATTGGATATGTTATTCCG TAGA TTCTAATGGACTATTA TTT AG  AGTG TGGAGACAACA  GAG        
       |||||||||||||||||||||||  ||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||   ||||||||||||||| ||||||| ||||||| |||||||||||||||||| |||| |||||||||||||||| ||| ||  |||| |||||||||||  |||         
       TTCCCATTTAATGTGGGTGTGGG  CTCCATACGAATTTATT AAATTCCAG GACAC ATAGCTATTAATGTGA TGGGG   TTTGTATTAATCTTT AGATTAC CTATTAC TAACCTATGCAATAAGGC ATCT AAGATTGCCTGATAAT AAA TC  TCAC ACCTCTGTTGT  CTC        
AAAAGCA                       TA                 A         G     G                A     -CC               G       C       A                  A    C                G   A  GA    C           AC   AATCCCCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End