SE3550387

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6605
  • Mimulus guttatus
  • SE3550387
  • PIF/harbinger
  • To1
  • scaffold_7:3393732-3394038
  • TAA
  • AGGTGGTGTTTGCAAAAGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                     --ATTTAAA   ATAAGTTAGTGATTGTGAGTTAAGTTGATATTAAGTGCTTAATTCTAAAAGTTGGGGGTGTTTGCAAAAATTCTGAAAAATCAATTTAAATAGAAGAAGCAGGTACATGGGTGCTTTTA
  AGGTGGTGTTTGCAAAAGCTT         AAC                                                                                                                       
  |||||||||||||||||||||         |||                                                                                                                       A
  TCCACCACAAACGTTTTCGAA         CTA                                                                                                                       
AA                     AATCTTTAT   ATACTCAAAAAAAGAAGGTATTCGACAAAAATTCACAAACGTTTTGGCTGAAAACAAAAACGAAGAGAATTTTATTCGACGAAAATCGATATTAAAATTTTTGTGGGTACATGGATTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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