Plant MITE

SE3520389

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6607
Mimulus guttatus
SE3520389
Mutator
M2
scaffold_14:18170511-18170777
CAATTAATA
ATTAATAGGGCAAATTACGGCCATCCCCCTGATGTAAGCTCAAATTAGGAAAAAAAACCCTCTTGTTTCGATAATTACAACTACCTCCTCAACTATGTATTGTCTTACG

Secondary structure and sequence

TSD TIR

5'

3'

CA      -                 TC       T              G      AA      T     C A              T                       AAAAAACCCC   T TTTAGTAGGTAAA
  ATTAAT AGGGCAAATTACGGCCA  CCCCTGA GTAAGCTCAAATTA GAAAAA  ACCCTC TGTTT G TAATTACAACTACC CCTCAACTATGTATTGTCTTACG          TCA A             
  |||||| |||||||||||||||||  ||||||| |||||||||||||| ||||||  |||||| ||||| | |||||||||||||| |||||||||||||||||||||||          ||| |             T
  TAATTA TCCCGTTTAATGCCGGT  GGGGACT CATTCGAGTTTAAT CTTTTT  TGGGAG ACAAA C ATTAATGTTGGTGG GGAGTTGATACATAACAGAATGT          GTA G             
 A      A                 --       C              A      --      T     C C              -                       ------GCAG   - GAATGCTACAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520389

CAATTAATAGGGCAAATTACGGCCATCCCCCTGATGTAAGCTCAAATTAGGAAAAAAAACCCTCTTGTTTCGATAATTACAACTACCTCCTCAACTATGTATTGTCTTACGAAAAAACCCCTCATATTTAGTAGGTAAATTTGACATCGTAAGGATGGACGTGTAAGACAATACATAGTTGAGGGGTGGTTGTAATTACCCAAACATGAGGGTTTTTTCATAATTTGAGCTTACCTCAGGGGTGGCCGTAATTTGCCCTAATTAATA

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