SE3520390

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6608
  • Mimulus guttatus
  • SE3520390
  • Mutator
  • M36
  • scaffold_14:19354621-19355041
  • TTTAAAATA
  • TTTAAAATAGGGTAATTGGCATTTTGCACCCTTCAATTATGCTCATTTGACACTTTGAAAAATAGTAGATAGCACCCTCAAATTAAGA

Secondary structure and sequence

TSD    TIR
5'



3'
        AAT                        TC                        -----------      - -     A                 TTTGCTT    CAT         --A   A   TTCTGCTAAAATTTGCGTTTGAAAACTTGATTTTACCATAATTCAATGGACAAAATGGTCAATTATTGTTAATTCATCAGTAAGAATA
   TTTAA   AGGGTAATTGGCATTTTGCACCCT  AATTATGCTCATTTGACACTTTGA           AAAATA G TAGAT GCACCCTCAAATTAAGA       GGCA   TGCACCATA   GAC CTT                                                                                        
   |||||   ||||||||||||||||||||||||  ||||||||||||||||||||||||           |||||| | ||||| |||||||||||||||||       ||||   |||||||||   ||| |||                                                                                         
   AAATT   TCCCATTGACCGTAAAACGTGGGA  TTAATATGAGTAAACTGTGAAACT           TTTTAT C GTCTA CGTGGGAGTTTAATTTT       TCGT   ACGTGGTGT   GGA TTT                                                                                        
ATA     ---                        CA                        GAGAATTTATT      A T     A                 -------    ATC         ATT   -   TCATCATGTTATTTTCCTAAATCCCTCTTGACTTTCCCATTTAAACACTTATTTAAGTAATGGTTGGAAAAATTAATGACTTTTAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End