Plant MITE

SE3520392

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6610
Mimulus guttatus
SE3520392
Mutator
M2
scaffold_10:2664473-2664831
TTTTTTTAA
AAGGGCAAATTACGGCCACCCCTGAGGTATGGTCAAATTACGAAAAAACCCCTCTTGTTTGAGTAATTACAGTCACCCCCTC

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTT               C          G      C            AA             A                 C  --TTTTTAAATATTTT     AAACTTTATGTAATTCGGTTATTTACCGAACCAAATCGTATATTTAGTTCGGTAAACGGTATGAAATGTTG
       AAGGGCAAATTACGG CACCCCTGAG TATGGT AAATTACGAAAA  CCCCTCTTGTTTG GTAATTACAGTCACCCC TC                TACGT                                                                       
       ||||||||||||||| |||||||||| |||||| ||||||||||||  ||||||||||||| ||||||||||||||||| ||                |||||                                                                        
       TTCCCGTTTAATGTC GTGGGGACTC ATACCA TTTAATGCTTTT  GGGGAGAACAAAC CATTAATGTCGGTGGGG AG                TAGAA                                                                       
AATTTTT               A          G      C            GG             C                 -  TTGATATATACATAAA     TGCTTTTCTGGGGAGTTCTCCATTTAAATCCCTATAATTAAGCCATTTTGGCTTGGTTTTAAAGCCATGCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520392

TTTTTTTAAGGGCAAATTACGGCCACCCCTGAGGTATGGTCAAATTACGAAAAAACCCCTCTTGTTTGAGTAATTACAGTCACCCCCTCTTTTTAAATATTTTTACGTAAACTTTATGTAATTCGGTTATTTACCGAACCAAATCGTATATTTAGTTCGGTAAACGGTATGAAATGTTGGCGTACCGAAATTTTGGTTCGGTTTTACCGAATTAATATCCCTAAATTTACCTCTTGAGGGGTCTTTTCGTAAGATAAATACATATATAGTTGAGGGGTGGCTGTAATTACCCAAACAAGAGGGGGGTTTTCGTAATTTCACCATAGCTCAGGGGTGACTGTAATTTGCCCTTTTTTTAA

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