Plant MITE

SE3510393

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6611
Mimulus guttatus
SE3510393
Tc1/Mariner
St3
scaffold_14:20288618-20288884
TA
TACTCCCTCCGTTCC

Secondary structure and sequence

TSD TIR

5'

3'

         C     TAAATA      -      CACC   - CA  AATCTTAAGAATC  ------  --  AATATGTCTTGATTTTAGGAAAATAGATATTGATGGACCAAAATACCCTTGTTTATTAATTAATGCATGAAGAGT
TACTCCCTC GTTCC      GATATC GTTTTT    TTG G  CA             TC      AA  TA                                                                           
||||||||| |||||      |||||| ||||||    ||| |  ||             ||      ||  ||                                                                           G
ATGAGGGAG CAAGG      TTATAG CAGAAA    AAC C  TT             AA      CA  GT                                                                           
         A     ----TA      A      ---A   T --  -------------  AAAAAA  AG  ATAATAGACAGTGAAATGTTAAGGTTACGACGTAATTAACGAATAAAAAGTTAAAATGGGAATAATTGAGATATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510393

TACTCCCTCCGTTCCTAAATAGATATCGTTTTTCACCTTGGCACAAATCTTAAGAATCTCAATAAATATGTCTTGATTTTAGGAAAATAGATATTGATGGACCAAAATACCCTTGTTTATTAATTAATGCATGAAGAGTGGTATAGAGTTAATAAGGGTAAAATTGAAAAATAAGCAATTAATGCAGCATTGGAATTGTAAAGTGACAGATAATATGGAACAAAAAAAATTCTCAAAAAAGACAGATATTATGGAACAGAGGGAGTA

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