Plant MITE

SE3520395

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6613
Mimulus guttatus
SE3520395
Mutator
M1
scaffold_12:22421718-22421976
AGCTACAGA
AGCT

Secondary structure and sequence

TSD TIR

5'

3'

          ACAGAA A   G                CC                      AA                     A C      C     TAA        ---TTTAGT     ATTAG    -   GTT
      AGCT      G GTT ATTGCAATTAGTACCC  TGTGTTATATCGAATTGCTAAA  ACTACTCCATGTTATTTTATT G GAAACC CCCCT   GATTTAAT         TAGCA     TACA CCT   
      ||||      | ||| ||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||| | |||||| |||||   ||||||||         |||||     |||| |||   T
      TCGA      C CAA TAACGTTAATCATGGG  GCACAATATAGTTTAACGATTT  TGATGGGGTATAATAAAATAA C TTTTGG GGGGA   CTAAGTTG         ATCGT     GTGT GGG   
AAGACA    ------ C   A                -A                      -C                     C A      T     -TA        TGGAAAAAC     -----    T   GGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520395

AGCTACAGAAGAGTTGATTGCAATTAGTACCCCCTGTGTTATATCGAATTGCTAAAAAACTACTCCATGTTATTTTATTAGCGAAACCCCCCCTTAAGATTTAATTTTAGTTAGCAATTAGTACACCTGTTTAGGGGGTTGTGTGCTACAAAAAGGTGTTGAATCATAGGGGTGGTTTTACCAATAAAATAATATGGGGTAGTCTTTAGCAATTTGATATAACACGAGGGTACTAATTGCAATAAACCCAGCTACAGAA

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