SE3520396

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6614
  • Mimulus guttatus
  • SE3520396
  • Mutator
  • M4
  • scaffold_8:22783522-22784070
  • TAAAAATAT
  • GGGTAAATTCCACTTTCCCCGTTTGTACTTTGGCTTGATATCACTTTACCCCTTCTACTCTCGATTGCATCTATTTGCCCTCCTGTACTTGAAAAATTGTCTCAACGTGGCCCTCGCTGTTGGTTTTCAG

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAATAT                    G                A  TC        -    -       C        CT        T                        C          C        T    CCCTTG               C A      -TC    AA         AG     C   C                -       --------------TT                  T  TGGCTGGCG  TT    T   TTT
         GGGTAAATTCCACTTTCCCC TTTGTACTTTGGCTTG TA  ACTTTACC CCTT CTACTCT GATTGCAT  ATTTGCCC CCTGTACTTGAAAAATTGTCTCAA GTGGCCCTCG TGTTGGTT TCAG      GACCTTAACACCGTT G TCTAAG   TGAA  TTACAAAAA  TCACC CTC CAGTTTAAATAATTAT TAAAAAA                AAAAAAATAAAAAATAAA TG         TC  GGAC ATG   
         |||||||||||||||||||| |||||||||||||||| ||  |||||||| |||| ||||||| ||||||||  |||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||      ||||||||||||||| | ||||||   ||||  |||||||||  ||||| ||| |||||||||||||||| |||||||                |||||||||||||||||| ||         ||  |||| |||    
         CCCATTTAAGGTGGAAGGGG GAACATGAAACCGAAC AT  TGAAATGG GGAA GATGAGA CTAACGTA  TAAACGGG GGACGTGAACTTTTTAACAGAGTT CACCGGGAGC ACAATCAA AGTC      CTGGAGTTGTGGCAA C AGATTC   ACTT  AATGTTTTT  GGTGG GAG GTCAAATTTATTAATA GTTTTTT                TTTTTTTGTTTTTTATTT AT         AG  TCTG TGC   
TATTAAAAT                    A                C  --        A    T       T        CC        -                        A          A        C    TGTAAA               A A      TAA    -A         GT     A   A                A       TGTTTTTTATTCATAT                  T  TATTTTTTA  -T    T   TCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End