Plant MITE

SE3520397

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6615
Mimulus guttatus
SE3520397
Mutator
M1
scaffold_14:6149423-6149676
CACATAATT
GTTTATTGCAATTAGTACCC

Secondary structure and sequence

TSD TIR

5'

3'

CACATAATTCGA                  C CAATT   C                 G    G            -CT     A    CCA      C       T       ATTAG   CC  GTTT
            GTTTATTGCAATTAGTAC C     TTA ATCGAATTGCTAAAAAA TACC TATGTTATTTTA   GCAAA ACCC   TGTGAT TAATTTT TTTAGCA     TAC  CT    
            |||||||||||||||||| |     ||| ||||||||||||||||| |||| ||||||||||||   ||||| ||||   |||||| ||||||| |||||||     |||  ||     
            CAAATAACGTTAATCATG G     AAT TAGCTTAACGATTTTTT ATGG GTACAATAAAAT   CGTTT TGGG   ATACTA GTTAAAA AAATCGT     GTG  GA    
TTTAATACACCC                  A CACAT   A                 G    G            AAC     A    AAG      A       C       -----   TT  AAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520397

CACATAATTCGAGTTTATTGCAATTAGTACCCCAATTTTACATCGAATTGCTAAAAAAGTACCGTATGTTATTTTACTGCAAAAACCCCCATGTGATCTAATTTTTTTTAGCAATTAGTACCCCTGTTTAGAAAGTTGTGTGCTAAACAAAATTGAATCATAGAAGGGTATTTGCCAATAAAATAACATGGGGTAGTTTTTTAGCAATTCGATATAATACACGAGTACTAATTGCAATAAACCCCACATAATTT

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