Plant MITE

SE3530398

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6616
Mimulus guttatus
SE3530398
hAT
Hat8
scaffold_11:22263826-22264432
CCTAAAGC
GCCAGTGTTCTAAATATCGGTTGT

Secondary structure and sequence

TSD TIR

5'

3'

 CCTAAA  C  T                  --  -       TATATCGGCCGCCATATCGGTGGCGGGAACAAACCTTTACGATATTTGTGTGGCGGTTTTGAAAATCGGTTTTTTGACGGTGAGGCGGCCCGAGGCGGTTTGTGGCGGTCTGTGGCGGGTCAAACCGATATATCGGGTCAAACTTTGAGCGATATATCGAGAAAATATTTTTTTTTCTAATTTTTTTATTTATTTTTTATTACAATAGGGTGTTTATCTTTATTTTTAATTTTTTTTCAATTCCAACCCATTATCTCTTTCAA
       GC AG GTTCTAAATATCGGTTGT  GG CGGCCGA                                                                                                                                                                                                                                                                       
       || || ||||||||||||||||||  || |||||||                                                                                                                                                                                                                                                                        
       CG TC CAAGATTTATAGCCAATA  CC GGCTCCG                                                                                                                                                                                                                                                                       
CGAAATC  T  -                  GC  A       CCAATCCCTGGCGGTGTGCTATTTAGCCACGCCGCCACTAATTAGCCTCTATATAGCCTTTATTTAGCCAAAAATCTAAATCACATTATATAAAGATTTATAATAAACAATTATAAATTTTACATATTTTTGTTTTACTTGAACTAATAGAGGAGTAGCAAATATATTAGATTAGTGTAATATTGTAAAAGAGAGGAGTAGCAAGATGTACAAAAATAAAAATCCGGTACAAAAAGAATGCCCCAGCCACTCAAAGCCAAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530398

CCTAAAGCCAGTGTTCTAAATATCGGTTGTGGCGGCCGATATATCGGCCGCCATATCGGTGGCGGGAACAAACCTTTACGATATTTGTGTGGCGGTTTTGAAAATCGGTTTTTTGACGGTGAGGCGGCCCGAGGCGGTTTGTGGCGGTCTGTGGCGGGTCAAACCGATATATCGGGTCAAACTTTGAGCGATATATCGAGAAAATATTTTTTTTTCTAATTTTTTTATTTATTTTTTATTACAATAGGGTGTTTATCTTTATTTTTAATTTTTTTTCAATTCCAACCCATTATCTCTTTCAATCAAACCGAAACTCACCGACCCCGTAAGAAAAACATGGCCTAAAAATAAAAACATGTAGAACGATGAGGAGAGAAAATGTTATAATGTGATTAGATTATATAAACGATGAGGAGATAATCAAGTTCATTTTGTTTTTATACATTTTAAATATTAACAAATAATATTTAGAAATATATTACACTAAATCTAAAAACCGATTTATTTCCGATATATCTCCGATTAATCACCGCCGCACCGATTTATCGTGTGGCGGTCCCTAACCGCCTCGGACCCGATAACCGATATTTAGAACCTTGCCTAAAGC

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