SE3520402

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6620
  • Mimulus guttatus
  • SE3520402
  • Mutator
  • M3
  • scaffold_5:16120450-16120900
  • TATTTAATA
  • TTAATAGGGTAAATTACACATACGTCCCTGAGGTATGCTGAAATAACTTCAAGGTCCCTGTATTATTGGTAATTACAGCCACACCCGTGAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAT     -              A    T  -       A              C       C    T               C   A   G    -----    GAAACAATTACTGGAGCCAAGATTTCACGTCCTGGTGACCGATATGCACTATCTTTGTTTTCCGCGGGGTCGTTATAATGCTACCATAGACGAAAATTTATAAATCTTATATAAGACAATAAGGA
   TTAAT AGGGTAAATTACAC TACG CC CTGAGGT TGCTGAAATAACTT AAGGTCC TGTA TATTGGTAATTACAG CAC CCC TGAA     GGCT                                                                                                                             
   ||||| |||||||||||||| |||| || ||||||| |||||||||||||| ||||||| |||| ||||||||||||||| ||| ||| ||||     ||||                                                                                                                             T
   AATTA TCCCATTTAATGTG ATGT GG GATTCCA ACGATTTTATTGAA TTTCAGG ACAT ATAGCCATTAATGTT GTG GGG ATTT     CAAT                                                                                                                             
 AT     A              G    -  A       C              A       T    C               A   -   G    TGTAA    CTTTGGGATTGCCTTATTATGTAACCTATTCAATAAGGCAATCCAAGATTGCCTGATAATCAAAGTCCGTCACCACCTCTGTTTTATCTCGGTCCCCGACTGTACCGAGAGGATTGTAAAGAATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End