Plant MITE

SE3510403

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6621
Mimulus guttatus
SE3510403
Tc1/Mariner
St2
scaffold_7:16686223-16686489
TA
TACTCCCTCCGTCCCAATTTAAATGACGTTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

         C      AT   A   ACG         GT  --------   - CA   TAAGAAAATCAATAAATGTGTATAGATTATAGTGAAAAGCATAGGAAAATACTAATATATTATTGACATTAATTATTTTAC
TACTCCCTC GTCCCA  TTA ATG   TTTTGGGTT  TG        CAC A  TAT                                                                                 
||||||||| ||||||  ||| |||   |||||||||  ||        ||| |  |||                                                                                  
ATGAGGGAG CAGGGT  AAT TAC   AAGATCTCT  CA        AGG T  TTA                                                                                 
         A      AT   A   AGA         --  AAAAAAAC   G --   ATAAACAGTAAAATCTAAAAGTTACGTAGTAATTAACGTAATAAAAGTTAAAATGGGAAATAGTGAGGATTAATCAATCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510403

TACTCCCTCCGTCCCAATTTAAATGACGTTTTGGGTTGTTGCACACATATTAAGAAAATCAATAAATGTGTATAGATTATAGTGAAAAGCATAGGAAAATACTAATATATTATTGACATTAATTATTTTACAACTAACTAATTAGGAGTGATAAAGGGTAAAATTGAAAATAATGCAATTAATGATGCATTGAAAATCTAAAATGACAAATAATTTGGGACAAAAAAAACTCTCTAGAAAGACATATAATATGGGACAGAGGGAGTA

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