SE3550405

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6623
  • Mimulus guttatus
  • SE3550405
  • PIF/harbinger
  • To7
  • scaffold_14:22075040-22075411
  • TTA
  • AGAGCAACTCCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               C    ----       ATTG    ATCAAATGGTCATTTGATATTTAAGATAATATTTTAAAATACATTTAAAACTCATCTACTCCAACCATGGTTATCAAATTTTATTATCAATTGGAAGTTTTTTGATAATTTTATATGTAATTGCCACATCTGCAATTTGTGAATGGTTG
  AGAGCAACTCCAATG TAAA    TATCAAA    GATT                                                                                                                                                     
  ||||||||||||||| ||||    |||||||    ||||                                                                                                                                                     G
  TCTCGTTGAGGTTAC CTCA    TTTACTC    AATA                                                                                                                                                     
AT               -    ATAA       ----    GTTTAGAGTATTGATGGTAAACTGAGGATTTCAAATTTAAAAAACAAGAGGTCTACCCAATAATTTTACCCAAACATAAAACTATAAATAGGAGAAACCTAGATTTTTATGAAGGACGTATAACTCAATAGTTTTTTTATTGGTGGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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