SE3520406

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6624
  • Mimulus guttatus
  • SE3520406
  • Mutator
  • M8
  • scaffold_10:8844310-8844668
  • TATATTGTA
  • ATATTGTAGGGCAAATTACGGCCAACCCCCTGCGTTATTGTCAAATTACGAAAACCCCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
T   T                    A       C T   T  C            CC     CCTA                       C  -----------AA   T  A   TCTTACGAAAAGACCCCTCCAGAGGTAAATTTAGGGATGTTTATTCGGTAAAACCGAATCGAAGTTTCAGTA
 ATA TGTAGGGCAAATTACGGCCA CCCCCTG G TAT GT AAATTACGAAAA  CCCCT    TTTGGGTAATTACAGCCACCCCC TC             CTA GT TTA                                                                        
 ||| |||||||||||||||||||| ||||||| | ||| || ||||||||||||  |||||    ||||||||||||||||||||||| ||             ||| || |||                                                                         
 TGT ATATCCCGTTTAATGCCGGT GGGGGAC C ATA CG TTTAATGCTTTT  GGGGA    AAACCCATTAATGTCGGTGGGGG AG             AAT GT ATT                                                                        
    T                    G       T C   C  A            CT     AAAC                       -  GAAAATTTATAAA   -  -   TTAAATACATTAAGCCAATAAATGGCTTGGTTTAGCATATAAATCAAGCCATTTGCCATACTTTACAACCGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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