SE3550407

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6625
  • Mimulus guttatus
  • SE3550407
  • PIF/harbinger
  • To10
  • scaffold_12:15432780-15433016
  • TTA
  • AGGGTCCATTTGGATGGAGGGATTTGGGGAGGGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     C                       -        ---     ----    A     TTTGAAATGACTCCAATTTAGGAGTCATTTGAAATCCATCACTATTGCTCCAAAATCAACT
  AGGGT CATTTGGATGGAGGGATTTGGGG AGGGATTT   GATTT    GGGG ATGGA                                                             
  ||||| ||||||||||||||||||||||| ||||||||   |||||    |||| |||||                                                              
  TCCCA GTAAACCTACCTCCCTAAACCCC TCCCTAAA   TAGGT    TTGT TTAGG                                                             
AT     C                       C        GTT     ATTA    -     GAGCCTGAACAAACCTAACTCCCTAAACCTCTACCTAAAGTTTAGGGGTGGGGAGTAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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