Plant MITE

SE3520408

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6626
Mimulus guttatus
SE3520408
Mutator
M2
scaffold_3:5825593-5825951
AAAAAAGTA
GGGCAAATTACGGCCACTCCCTGAGCTATGGTCAAATTACGAAAACCTCCCTCCTGTTTGGGTAATTACAGCCACCCCCATC

Secondary structure and sequence

TSD TIR

5'

3'

AAAAAAGTA                         C                   CC      C                         A  -AACTAT      ATC     -    GAC    C  GAGGTAAATTTAGGGATGTTAATTCGGTAAAACCGAACCAAAATTTCGGTACGCCA
         GGGCAAATTACGGCCACTCCCTGAG TATGGTCAAATTACGAAAA  TCCCTC TGTTTGGGTAATTACAGCCACCCCC TC       GTATTT   TTACG AAAA   CCCT AA                                                        
         ||||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||||||||||||||||||| ||       ||||||   ||||| ||||   |||| ||                                                         
         CCCGTTTAATGCCGGTGGGGGACTC ATACCAGTTTAATGCTTTT  GGGGAG ACAAACCCATTAATGTCGGTGGGGG AG       TATAAA   AATGC TTTT   TACA TT                                                        
ATGAAAAAA                         C                   TT      A                         -  CAAAATT      ---     A    AAA    -  AAGCAAATAAATGGCTTGGTTTAGCATATAAATCAAGCCATTTGCCATACTTTACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520408

AAAAAAGTAGGGCAAATTACGGCCACTCCCTGAGCTATGGTCAAATTACGAAAACCTCCCTCCTGTTTGGGTAATTACAGCCACCCCCATCAACTATGTATTTATCTTACGAAAAGACCCCTCAAGAGGTAAATTTAGGGATGTTAATTCGGTAAAACCGAACCAAAATTTCGGTACGCCAACATTTCATACCGTTTACCGAACTAAATATACGATTTGGTTCGGTAAATAAACGAATTACATAAATTTTACGTAAAAATATTTAAAACGAGGGGGTGGCTGTAATTACCCAAACAAGAGGGGTTTTTTCGTAATTTGACCATACCTCAGGGGGTGGCCGTAATTTGCCCAAAAAAGTA

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