SE3520409

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6627
  • Mimulus guttatus
  • SE3520409
  • Mutator
  • M8
  • scaffold_12:872917-873385
  • TATATATAA
  • TATATATAAGGGTAAATTACAACCAAACCCCTGAGGTATGGTCAATTTACGAAAAAACCCCTTTTGTTTGGATAATTACATTTACCCCTCAACTATGATTTTTTCCTTACACCTTCACCCTTATGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
         A                AAC                 T         AA              A        T      C          TT     C      C         A    G   A   CAACAT    A  T     T          GCTTTAG         -----    TGTGTAAAAATACAGTTTCTGATACACCACAATGTGATATATACAAGTC
 TATATATA GGGTAAATTACAACCA   CCCTGAGGTATGGTCAA TTACGAAAA  CCCCTTTTGTTTGG TAATTACA TTACCC TCAACTATGA  TTTTC TTACAC TTCACCCTT TGGT TCA ATT      AATC TC AGATT TGTGGAATGT       TTTGTACTC     GATT                                                 
 |||||||| ||||||||||||||||   ||||||||||||||||| |||||||||  |||||||||||||| |||||||| |||||| ||||||||||  ||||| |||||| ||||||||| |||| ||| |||      |||| || ||||| ||||||||||       |||||||||     ||||                                                  
 ATATATAT CCCATTTAATGTTGGT   GGGGCTCCATACCAGTT AATGCTTTT  GGGGAGGACAAACC ATTAATGT GGTGGG AGTTGATATT  AGAAG AATGTG AGGTGGGAA GTCA AGT TAA      TTAG AG TCTAA ATACCTTATA       AAACATGGG     TAGG                                                 
A        -                --A                 T         GG              C        T      T          -T     -      C         C    A   C   ATCACC    A  C     T          ATAGTGA         CAAAA    ATAAGCTTAAGGTGTAAAACTTCGTTCTACTAGTATTATACACAAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End