SE3520410

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6628
  • Mimulus guttatus
  • SE3520410
  • Mutator
  • M35
  • scaffold_8:19291821-19292087
  • AAGTATTAT
  • AGTATTATGGGTTTATTGCATTTAGCACCCCCTGTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
   A      A                  C   CCC      TACT  -  T   ------CA        C  T          TTA      -TCCCCCTAC      A    -A   A  A   A        AATTG
    AGTATT TGGGTTTATTGCATTTAG ACC   TGTGTT    CC AA TGT        AAAACTCC CG GTTATAAATA   GCAAAA          GATTCA TTTT  GCA CA AGC CCCCCTAA     
    |||||| |||||||||||||||||| |||   ||||||    || || |||        |||||||| || ||||||||||   ||||||          |||||| ||||  ||| || ||| ||||||||     C
    TTATGA ACTCAAATAACGTAAATC TGG   ACACAA    GG TT ACG        TTTTGAGG GC CAATATTTAT   CGTTTT          TTAAGT AAAA  CGT GT TTG GGGGGATT     
TATA      A                  A   -CA      -TAT  C  T   ATTTTCTG        A  C          TAG      TTTTGAGTTC      A    AC   -  G   -        CATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3