SE3550411

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6629
  • Mimulus guttatus
  • SE3550411
  • PIF/harbinger
  • To1
  • scaffold_7:6263662-6263950
  • TTA
  • AGGTGGTGTTTGCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                TGATTATTTAAA   -AGAA TT             -----------------   GCCAGTTTTAAGTGCTTATTTCTAAAAGTTGGGGGTGTTTGCAATTATTCCGGAAAATGAACTTAAATAGAAAAAGCAGGGTTAG
  AGGTGGTGTTTGCAAA            AGC     G  AGTGATTGTGAGT                 TAA                                                                                     
  ||||||||||||||||            |||     |  |||||||||||||                 |||                                                                                     G
  TCCACCACAAACGTTT            TCG     C  TCACTAATACTCA                 GAC                                                                                     
AT                ------------   AAAAA TT             AAAAAAAACGATTATTA   AAAAGTCCACAAACGTTTTAGTTGAAAACGAAAACGAAGAGAACTTTATTAGACAAAATTCGATAAAAAAATTTTCGTGGGGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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