Plant MITE

SE3520412

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6630
Mimulus guttatus
SE3520412
Mutator
M2
scaffold_5:10952005-10952363
TTAAAAAAA
AAGGGCAAATTACGGCCACCACCCTGATGTATGGTGAAATTACGAAAAAACCCCTCTTGTTTAGGTGATTACAGCCACCCCCTCCTTTTAAATATTTTTACG

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAA                    A      TG      G            AA            A                    C TT   AA   ---       ---TA     TATGTAATTCGGTTATTTACCGAACCAAATATTATATTTTGTTCGGTAACGGTATGAAATG
       AAGGGCAAATTACGGCCACC CCCTGA  TATGGT AAATTACGAAAA  CCCCTCTTGTTT GGTGATTACAGCCACCCCCT C  TTA  TAT   TTTTACG     AAATT                                                             
       |||||||||||||||||||| ||||||  |||||| ||||||||||||  |||||||||||| |||||||||||||||||||| |  |||  |||   |||||||     |||||                                                              
       TTCCCGTTTAATGCCGGTGG GGGACT  ATACCA TTTAATGCTTTT  GGGGAGGACAAA CCATTAATGTCGGTGGGGGG G  GAT  ATA   AGAATGC     TGGGG                                                             
AAAAAAA                    -      CG      G            GG            C                    A TT   AC   AAT       TTTTC     AGGTCTCCATTTAAATCCCAACAATTAAGCCATTTTGGCCTGGTTTTAAAGTCATGCGGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520412

TTAAAAAAAGGGCAAATTACGGCCACCACCCTGATGTATGGTGAAATTACGAAAAAACCCCTCTTGTTTAGGTGATTACAGCCACCCCCTCCTTTTAAATATTTTTACGTAAAATTTATGTAATTCGGTTATTTACCGAACCAAATATTATATTTTGTTCGGTAACGGTATGAAATGTTGGCGTACTGAAATTTTGGTCCGGTTTTACCGAATTAACAACCCTAAATTTACCTCTGGAGGGGTCTTTTCGTAAGATAAATACATAGTTGAGGGGGGTGGCTGTAATTACCCAAACAGGAGGGGGGTTTTCGTAATTTGACCATAGCTCAGGGGGTGGCCGTAATTTGCCCTTAAAAAAA

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