Plant MITE

SE3510413

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6631
Mimulus guttatus
SE3510413
Tc1/Mariner
St4
scaffold_5:2476860-2477126
TA
TACTCCCTCCGTTCCTTTATAATTGTCGTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C     TTT         G     ------------A  TTGTGCACAAGGATTAAGGATCTCAATAAATGTTGCTTAATTTTAGAAAAATATATGTTCTTATACTAAAATGCCCTTGCCAATAATTAAT
TACTCCCTC GTTCC   ATAATTGTC TTTTT             GC                                                                                           
||||||||| |||||   ||||||||| |||||             ||                                                                                           G
ATGAGGGAG CAAGG   TATTGACAG GAAAA             CA                                                                                           
         A     TGT         A     ATTTTAATAAAAA  AGGTATAATAGACAGTGAAATGTAAAGGTTATGACGTAATTAACACATTAATAGTTAAAATGGGAATAATGGATAGAGTTTGTGAGAGAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510413

TACTCCCTCCGTTCCTTTATAATTGTCGTTTTTAGCTTGTGCACAAGGATTAAGGATCTCAATAAATGTTGCTTAATTTTAGAAAAATATATGTTCTTATACTAAAATGCCCTTGCCAATAATTAATGTGAGAGAGTGTTTGAGATAGGTAATAAGGGTAAAATTGATAATTACACAATTAATGCAGTATTGGAAATGTAAAGTGACAGATAATATGGAACAAAAATAATTTTAAAAAGAGACAGTTATTGTGGAACAGAGGGAGTA

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