SE3530415

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6633
  • Mimulus guttatus
  • SE3530415
  • hAT
  • Hat29
  • scaffold_12:22548018-22548467
  • ATGACAAG
  • CTATGTAGCACGGAAATGGCGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGACAAG        C        GG    ---------     GAAAGGGGGAAACGGATACGGGGAAACGGCATGTTCCGAAAATGGGATAGGGGAATTTGGGGGAAAGCGTATAAATATTAAAGGTATAGGGGTATATTTTTAAATAGTTTATATAAACATATATAAGTTTTTTTTTATATATAAATTCCTTTTATATATTTTTATACAAACATATTCAAAACAA
        CTATGTAG ACGGAAAT  CGAT         ATGGT                                                                                                                                                                                        
        |||||||| ||||||||  ||||         |||||                                                                                                                                                                                        G
        GATACATT TGCTTTTG  GTTG         AGAGG                                                                                                                                                                                        
GAACAGTA        T        AA    AAAAATTAC     CGCAAATCCTTTACAAAGCACAGACTTTAAGCTTCTGTGCATAGCTTGTGGAATACCCAGTAAAATGTTGATGAAACATTAAAGATTTTTTAATATTTGTACAGATTCATCGTTTAAAAGTTTTTTTAAATAACAAAGGGTTTAATAAGTGAATTAAATTACGTTAACGTTTAACTATCATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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