Plant MITE

SE3550417

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6635
Mimulus guttatus
SE3550417
PIF/harbinger
To2
scaffold_13:2442587-2442815
TTA
AGGCCTCGTTTGGT

Secondary structure and sequence

TSD TIR

5'

3'

TT              TG    A  T ---------------------- C    TTTAACT      TTGGACTTTGTTTGATGTTTCGTATCCCAAATAGATTGCCAGGTTGACCCGCAAATATTATGT
  AGGCCTCGTTTGGT  GGGA AT A                      G CATT       AAATAA                                                               
  ||||||||||||||  |||| || |                      | ||||       ||||||                                                               T
  TCCGGAGCAAACCA  ACGG TT C                      C TGGG       TTAATA                                                               
AT              --    -  - TATTCTAATTTATTAAATTACT -    -------      TAATAACCTGGAACCTTCTAGGTTATTTTTTGTATGGATTTTCCGCTTAATAACCCCTATGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550417

TTAGGCCTCGTTTGGTTGGGGAAATTAGCCATTTTTAACTAAATAATTGGACTTTGTTTGATGTTTCGTATCCCAAATAGATTGCCAGGTTGACCCGCAAATATTATGTTTGGTATCCCCAATAATTCGCCTTTTAGGTATGTTTTTTATTGGATCTTCCAAGGTCCAATAATATAATTGGGTCTCATTAAATTATTTAATCTTATCTTGGCAACCAAACGAGGCCTTA

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