SE3520419

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6637
  • Mimulus guttatus
  • SE3520419
  • Mutator
  • M9
  • scaffold_17:625589-625918
  • TACGATTGA
  • CGATTGAAGGGAAAAATACGGTTTCCATCCCTCAAGTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TA      A        A        C               CACCGA                        ACAC                   A        AATTTG         A                 TA    AATACTAATGGAATCAAGCGTGTGCC
  CGATTG AGGGAAAA TACGGTTT CATCCCTCAAGTTTG      TTTCATATTTGGTCCCTCATGTTC    AAAACACATTTGGTCCCTC TGTTTCAA      AACACTTTT GTCATTTCCGTCAATTT  CGTT                          
  |||||| |||||||| |||||||| |||||||||||||||      ||||||||||||||||||||||||    ||||||||||||||||||| ||||||||      ||||||||| |||||||||||||||||  ||||                           
  GTTAGC TCCCTTTT ATGTCAAA GTAGGGAGTTCGAAC      AAAGTGTAAACCAGGGAGTATAAG    TTTTGTGTAAACCAGGGAG ACAAAGTT      TTGTGAAAA CAGTAAAGGCAGTTAAA  TGAC                          
AA      A        A        A               ------                        CACT                   C        ATTCAA         C                 --    CATCAGGCAGTCAATTCCGTCACTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End