SE3520422

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6640
  • Mimulus guttatus
  • SE3520422
  • Mutator
  • M9
  • scaffold_14:1382122-1382457
  • GATATTTAT
  • GATATTTATTGGGAAAATTACAGTTTTCATCCCTCAAGTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
    TT           T         C              CACC              G  - C      C          C      C C  C        A    T       A  -   CATTT          A  G  --      -TTAGTTA    -A   AT
GATA  TATTGGGAAAA TACAGTTTT ATCCCTCAAGTTTG    AATTTCACATTTGG TC C CATGTT ACAAAAAACA ATTTGG C CT ATGTTTCA AAAT TAACACT TT GTT     CCGTCAATTT TT TT  AGTCCG        AAGC  GTG  
||||  ||||||||||| ||||||||| ||||||||||||||    |||||||||||||| || | |||||| |||||||||| |||||| | || |||||||| |||| ||||||| || |||     |||||||||| || ||  ||||||        ||||  |||  G
TTAT  ATAGCCCTTTT ATGTCAAAA TAGGGAGTTCAAAC    TTAAAGTGTAAACC AG G GTATAA TGTTTTTTGT TAAATC G GA TACAAAGT TTTA GTTGTGA AA CGA     GGCAGTTAAA AG AA  TTAGGT        TTCG  TAC  
    TT           T         A              ATAA              -  A A      A          A      A A  A        C    C       A  T   -CAAC          -  G  AT      TACCTTAG    CA   GT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End