Plant MITE

SE3520423

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6641
Mimulus guttatus
SE3520423
Mutator
M2
scaffold_17:481714-482054
TTATTTTTA
AGGGCAAATTACGGCCACCCCCTGAGGTATGGTCAAATTACGAAAAAACCCCT

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTTT                          G      C           AA      CTTGT   GGTAATTACAACCACCCCCCTCCTTTTAAATATTTTTACGTAAAATTTATGTAATTCGGTTATTTACCGAACCAAATCGTATATTTAGTTCGGTAAATGGTATG
        AGGGCAAATTACGGCCACCCCCTGAG TATGGT AAATTACGAAA  ACCCCT     TTG                                                                                                        
        |||||||||||||||||||||||||| |||||| |||||||||||  ||||||     |||                                                                                                         
        TCCCGTTTAATGCCGGTGGGGGACTC ATACCA TTTAATGCTTT  TGGGGG     GGT                                                                                                        
ATTTTTAT                          G      C           --      ---TC   GGGGGGAGTTGATACATAAATAGAATGCTTTTCTGGGGAGTTCTCCATTTAAATCCCTACAATTAAGCCATTTTGGCTTTGTTTTAAAACCATGCGGTTGTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520423

TTATTTTTAGGGCAAATTACGGCCACCCCCTGAGGTATGGTCAAATTACGAAAAAACCCCTCTTGTTTGGGTAATTACAACCACCCCCCTCCTTTTAAATATTTTTACGTAAAATTTATGTAATTCGGTTATTTACCGAACCAAATCGTATATTTAGTTCGGTAAATGGTATGAAATGTTGGCGTACCAAAATTTTGTTTCGGTTTTACCGAATTAACATCCCTAAATTTACCTCTTGAGGGGTCTTTTCGTAAGATAAATACATAGTTGAGGGGGGTGGCTGGGGGTTTTCGTAATTTCACCATAGCTCAGGGGGTGGCCGTAATTTGCCCTTATTTTTA

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