SE3550426

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6644
  • Mimulus guttatus
  • SE3550426
  • PIF/harbinger
  • To20
  • scaffold_8:19128325-19128706
  • TAA
  • AGAGCAACTCCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              ---G          ---- TG  TTATCAAAACTATTAACTACCATTTTGATAATTCAAGTTAGAAATTTTCCACTCCAATGGAGTTATCAAATGGGTTTCTATTTTGATATTTTAATTTTTGGGATGTAAAAATACATCCGGAAGAAATAATGTCAATTGGAAGTTACACAACTTATC
  AGAGCAACTCCAAT    GAGTTATTAA    A  GG                                                                                                                                                            
  ||||||||||||||    ||||||||||    |  ||                                                                                                                                                            C
  TCTCGTTGAGGTTG    TTTATAGTTT    T  AA                                                                                                                                                            
AA              GGTA          TACT --  TAGTTTATAAATAAACTATAAAATATAAAATCAAACTATGGATTGATTTAAATAAACGAGGTTGGTATCTCTATAGTTTATCAACTATTAATTTTTATTTATTACACTTATATATAAAATTAATTGTGTACAGTAAAAGATTAACCGATAAATCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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