SE3550427

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6645
  • Mimulus guttatus
  • SE3550427
  • PIF/harbinger
  • To2
  • scaffold_5:14185408-14185647
  • TAA
  • AGGCCTCGTTTGGTTGGGGAGATTAGCCATGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -----GG           T   --------TA   AAATCGTTGGACTTTGTTTGATGTTTGGTATCCCCAATAACTTGCTGGGTCGACCCGCAAATATTATATTATC
  AGGCCTCGTTTGGTTG       GAGATTAGCCA GAT          ACT                                                                         
  ||||||||||||||||       ||||||||||| |||          |||                                                                         A
  TCCGGAGCAAACCAAC       TTCTAATCGGT CTA          AAG                                                                         
AA                GGTACTA           T   TTTAATTTAT   ATTACTTTGGGTTAACATAATAACCTGGAACCTTCTAGGTTATTTTTTGTACGGATTTTTTGTTCTGTTCCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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