SE3520428

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6646
  • Mimulus guttatus
  • SE3520428
  • Mutator
  • M8
  • scaffold_14:17143663-17144127
  • TTATCACTA
  • AGGGTAAATTACAACCACCCCTGAGGTATGGTCAAATTACGAAAACTCTCTCTTGTTTGAGTAATTACAACCACCCCTCTCAACTATAATCTTCTTACACGTCCACCTTTACGGTTTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TTATCACT                    -            C  A         --C  T          A       CAA C  C               --C         G          CG  T       A   -  ATT      --------------  TAT    AATATTATCACTTTTGTACCCGTTTTATCCCATTCGAACTCCACATTTTGAAGCAAGATGATCATAATATGT
        AGGGTAAATTACAACCACCC CTGAGGTATGGT AA TTACGAAAA   TC CTCTTGTTTG GTAATTA   C AC CCTCTCAACTATAAT   TTCTTACAC TCCACCTTTA  GT TCAAATT GTG GA   TTCGAG              AT   ATGG                                                                        
        |||||||||||||||||||| |||||||||||| || |||||||||   || |||||||||| |||||||   | || |||||||||||||||   ||||||||| ||||||||||  || ||||||| ||| ||   ||||||              ||   ||||                                                                         
        TCCCATTTAATGTTGGTGGG GACTCCATACCA TT AATGCTTTT   AG GAGAACAAAC TATTAAT   G TG GGGGAGTTGATATTA   AAGAATGTG AGGTGGGAAT  CA AGTTTAA GTT TA   TTAGTA              TA   CACG                                                                        
 ATACTAT                    A            A  A         TTA  -          C       ATA A  A               AAA         G          AA  C       -   G  ---      GATCTAAAGCACCT  ---    AGATCAAACATGAGCAAAACACATTTTTATGTCAAAGACTACGTGGTTAGACCATATATGTTTGATTTTTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End