SE3520429

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6647
  • Mimulus guttatus
  • SE3520429
  • Mutator
  • M2
  • scaffold_7:4240362-4240833
  • TAAAAATAT
  • GGGTAAATTACAACCACCACCCTAAGGTATGGCTAATTTACGAAAAAAACTCTCATGTTTGGGTAATTACAACCACACCCCCAACTATAAATCTTCATACACGTCCACCCTTGTGGTGTCAAATTTAGTGGAATCATCTGGATTATGTGGAATATTCTC

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAATAT                 CAC   A      -  C   T         AAA   -                     CAC     -       A       A            C                  TGG   CA    G            A     AATC      C      ATCC    ---CGA  ------    CATTTGGAAGCAAGATGATCATAAGATGTGTTT
         GGGTAAATTACAACCAC   CCT AGGTAT GG TAA TTACGAAAA   CTC TCATGTTTGGGTAATTACAAC   ACCCC CAACTAT AATCTTC TACACGTCCACC TTGTGGTGTCAAATTTAG   AAT  TCTG ATTATGTGGAAT TTCTC    TTGTAC CGTTTT    CATC      GC      TCCA                                 
         |||||||||||||||||   ||| |||||| || ||| |||||||||   ||| |||||||||||||||||||||   ||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||   |||  |||| |||||||||||| |||||    |||||| ||||||    ||||      ||      ||||                                  
         CCCATTTAATGTTGGTG   GGA TCCATA TC GTT AATGCTTTT   GAG AGTACAAACCTATTAATGTTG   TGGGG GTTGGTA TTAGGGG ATGTGCAGGTGG AATACCACAGTTTAAGTT   TTA  AGAT TAATACACCTTA AAGAG    AACATG GCAAAA    CACG      CG      ACTA                                 
TATAAAAAT                 --A   C      A  A   T         --A   G                     --A     A       C       A            C                  GTA   AA    G            C     ATCA      A      ----    TTTTTA  TCAAAG    CGTGGTGTTAAACTATGTATGTATGTTCGGTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End