Plant MITE

SE3530430

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6648
Mimulus guttatus
SE3530430
hAT
Hat13
scaffold_4:20341429-20342134
GTATTTAT
GTATTTATTAGGGGTGTGCA

Secondary structure and sequence

TSD TIR

5'

3'

   TT           T   ------    ----    TTCGGTTCGGTTTTAGCAAAAAACCGAACCGAACCAATATATCGGTTTTTGTAAAATTAAAAACCGTGTATGTCGGTTTTTTATCGGTTCGGTTTCTTTCGGTTTCGGTTCGGTTTCGGTTTTTTTCGGTTCGGTTTCGGTTATTTTTCGGTTCAAGTGTCAATATATATTCAAGTTGTTGTACAAACAAAAAAATACAATTACAATTACTTTCACAACTTACTAATGCAATGAAAATATAAAATCTTTAATTTCATAGGACTTACGTAATTTAGATGATGTATTATGCTTCACTTTTTTTTCCTACTTTCATCTACCAC
GTA  TATTAGGGGTG GCA      CGGG    TCGG                                                                                                                                                                                                                                                                                                                                
|||  ||||||||||| |||      ||||    ||||                                                                                                                                                                                                                                                                                                                                 
TAT  ATGATCCCCAC CGT      GGCT    GGCT                                                                                                                                                                                                                                                                                                                                
   TT           T   TTTTTT    TTTT    TTTTGGCTTGGCTTTTTGGCTTTTTGGCTCGGCAAAATTTGGCATGGCTTATCGTTTGGCGTACATGCCAAAAAATAAAAACTTTATGGCTTAATAACCCAAGCCATACCACCCTTCCATTTATTGGCTTGGCTTTTTGGCTTGGCTTGGCTTTGATATTTTACTGAAGTAAAATATATTATATACATAATAAAATGGGATTATAAATAAAAGATAGAAAGTTAATGAACAGAGTAAGATTCGTAAACAAGTATTTAACTCTGTAACATAAAATAAATAAATCATTCATTTTTAAATGAACTCAAGTACCAAAATTATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530430

GTATTTATTAGGGGTGTGCACGGGTCGGTTCGGTTCGGTTTTAGCAAAAAACCGAACCGAACCAATATATCGGTTTTTGTAAAATTAAAAACCGTGTATGTCGGTTTTTTATCGGTTCGGTTTCTTTCGGTTTCGGTTCGGTTTCGGTTTTTTTCGGTTCGGTTTCGGTTATTTTTCGGTTCAAGTGTCAATATATATTCAAGTTGTTGTACAAACAAAAAAATACAATTACAATTACTTTCACAACTTACTAATGCAATGAAAATATAAAATCTTTAATTTCATAGGACTTACGTAATTTAGATGATGTATTATGCTTCACTTTTTTTTCCTACTTTCATCTACCACATTATTAAAACCATGAACTCAAGTAAATTTTTACTTACTAAATAAATAAAATACAATGTCTCAATTTATGAACAAATGCTTAGAATGAGACAAGTAATTGAAAGATAGAAAATAAATATTAGGGTAAAATAATACATATATTATATAAAATGAAGTCATTTTATAGTTTCGGTTCGGTTCGGTTTTTCGGTTCGGTTATTTACCTTCCCACCATACCGAACCCAATAATTCGGTATTTCAAAAATAAAAAACCGTACATGCGGTTTGCTATTCGGTACGGTTTAAAACGGCTCGGTTTTTCGGTTTTTCGGTTCGGTTTTTCGGTTTTTCGGTTTTTTTGCTCACCCCTAGTATTTAT

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