SE3520432

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6650
  • Mimulus guttatus
  • SE3520432
  • Mutator
  • M2
  • scaffold_4:6386845-6387259
  • CGAATTTTA
  • GAATTTTAGGGTAAATTACAATCACCCTTGAGGTATAGTCAATTTACGAAAAAACCCCCCTCTTGTTTGGATAATTACAACCACCCCCTCAACTATGATTTTTTCTTACACCTCCACTCTTTTGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
 C      TA                    ---        A  C  T   CG       CCC                             C          T     C      CTC     TTT    G       CAACATA   ATCTAGATTTCGTGAAATGTGCTCTAGTTTGTACTCGTTTTATGTAAAAATACAGTTTCTGATACA
  GAATTT  GGGTAAATTACAATCACCCT   TGAGGTAT GT AA TTA  AAAAAAC   CCTCTTGTTTGGATAATTACAACCACCCC TCAACTATGA TTTTT TTACAC   CACTC   TGGT TCAAATT       ATT                                                                  
  ||||||  ||||||||||||||||||||   |||||||| || || |||  |||||||   ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||   |||||   |||| |||||||       |||                                                                  C
  TTTAAG  CCCATTTAATGTTAGTGGGG   ACTCCATA CA TT AAT  TTTTTTG   GGAGAATAAACCTATTAATGTTGGTGGGG AGTTGATATT AGAAA AATGTG   GTGGG   GCCA AGTTTAA       AGC                                                                  
AT      -C                    GGA        C  A  T   -A       --A                             -          T     A      CAA     TAT    A       -------   ACCTTAAAAGCTCCAATATACCTAATAATAGTGAAAACAAAAATTCGAACATATATAGTCTAACAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End