SE3520433

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6651
  • Mimulus guttatus
  • SE3520433
  • Mutator
  • M5
  • scaffold_4:5576623-5576979
  • TTATAGTTA
  • GTTAGGGTAAATTATGAAACCATCCAAACTTAGGATAAATAACGAAAAATACCCCCATCTATCCGTAATAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATA  T             -     A  CA     A  A                  C        C      A   AAAATCCC    TGATTA  --   TGAT    -----    TAACAGAAAATGTGTACAGTCTATTATAACTTCTGTTAAATAGGTGAGAAATAAAAGAAAATATCTGAAA
     GT AGGGTAAATTATG AAACC TC  AACTT GG TAAATAACGAAAAATACC CCATCTAT CGTAAT ACT        TCTC      AC  TGT    CGTT     TTTT                                                                      
     || ||||||||||||| ||||| ||  ||||| || |||||||||||||||||| |||||||| |||||| |||        ||||      ||  |||    ||||     ||||                                                                      T
     TA TCCCATTTAATAC TTTGG AG  TTGAA CC ATTTATTGCTTTTTGTGG GGTGGATA GCATTA TGA        TCTT      TT  AGA    CTCC     AAGC                                                                      
ATTGA  T             C     G  AC     A  G                  A        A      A   --------    ------  TG   ----    AAACA    AGAATGTGCTTGGGGGAATGTCACATTGAAAAGCGCTAAAAAAAAATAAGGTACCTTATCTAAAATGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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