SE3520434

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6652
  • Mimulus guttatus
  • SE3520434
  • Mutator
  • M44
  • scaffold_3:588048-588614
  • TAATTAATA
  • ATTAATAGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA      -    CGAATT         T  --      G       C           -TTG     C        T      --  -A    ACC                 C         C   A C   T  ------   --  G         C AGA     AATAAATA A    A  G           CA        AGGACATATCAA   - GAAGAATTTGAAAATTCTCACAATTTTGGGACTGCAATAAGCACAATTCGTGTTGGGAGAAAAACAAACCCAA
  ATTAAT AGGA      AAGTGCACT CG  CCCCTA AAATTTT AATTTTTGCAC    CCCAC TACAAATT AAAAAA  GA  ATTC   CCTTCAAAATTTTGTTC AGTTGCATT TGC C CAA TT      GCT  GC TATTTTTCA C   GTTGC        C TTCA TT AAGGGCATTTG  TCATTTTA            CGA A                                                                         
  |||||| ||||      ||||||||| ||  |||||| ||||||| |||||||||||    ||||| |||||||| ||||||  ||  ||||   ||||||||||||||||| ||||||||| ||| | ||| ||      |||  || ||||||||| |   |||||        | |||| || |||||||||||  ||||||||            ||| |                                                                          
  TAATTA TCCT      TTTACGTGA GC  GGGGAT TTTAAAA TTAAAAACGTG    GGGTG ATGTTTAA TTTTTT  CT  TAAG   GGAAGTTTTAAAACAAG TCAACGTGA ACG G GTT AG      CGG  CG ATAAAAAGT G   TAACG        G AGGT AA TTCCCGTAAAC  AGTGAAAT            AGA A                                                                         
 A      A    ----AT         C  AG      G       A           TAAA     -        C      AC  GA    --C                 T         A   - A   T  TGTCCC   AC  G         A CAA     GTAAATAG C    G  G           TC        ------AATAAA   A GTTTAAGATTATGGGAATATAAAAAATTATCTACTTTTTGTGTTTGGTAAAGTGATTAAAGTATTTTAATTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End