SE3520436

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6654
  • Mimulus guttatus
  • SE3520436
  • Mutator
  • M14
  • scaffold_3:16185718-16185969
  • TTTAAATTA
  • GGTAAATTACAACCACCTCCCTGAGGTAAAGTGTAAATACGAGAAACAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAAATTAT    A       C  C             A  G  AA  C      C  AAAA    A    G  A    A      A    CTA         AA          CT  C    AC
          GGTA ATTACAA CA CTCCCTGAGGTAA GT TA  TA GAGAAA AA    CTTA TTTT AG AATT CATCCA CCCC   CAGTTTGTA  TTTCTTACAT  AC CCCT  
          |||| ||||||| || ||||||||||||| || ||  || |||||| ||    |||| |||| || |||| |||||| ||||   |||||||||  ||||||||||  || ||||  A
          CCAT TAATGTT GT GAGGGACTCCATT CA AT  AT CTTTTT TT    GAAT AAAA TT TTAA GTAGGT GGGG   GTTAAACAT  AAAGAATGTG  TG GGGA  
ATTAAATTTC    C       A  A             C  G  AA  A      -  -GGG    A    G  A    A      -    AAC         CC          AT  T    AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End