SE3520438

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6656
  • Mimulus guttatus
  • SE3520438
  • Mutator
  • M9
  • scaffold_7:10339559-10339894
  • AAAAGTATT
  • AAGTATTTGGGAAAATTATAATTTTCATCCCTCAAGTTTGCACTGCTTTCACATTTGGTCCCCCATGAGTATAAAAAACACATTTGGCCCCTCGTGTTTCAATAATTTAACACTTTTGGTCATTTCCGTCAATTTATTGTTAGT

Secondary structure and sequence

TSD    TIR
5'



3'
AA      --         T    A        CC                    C        CC     AG        AC        C           C  T       C              C         A        C  -   G TAAGGCAGTGATGT
  AAGTAT  TTGGGAAAA TATA TTTTCATC  TCAAGTTTGCACTGCTTTCA ATTTGGTC  CCATG  TATAAAAA  ACATTTGG CCCTCGTGTTT AA AATTTAA ACTTTTGGTCATTT CGTCAATTT TTGTTAGT CG TCA T              
  ||||||  ||||||||| |||| ||||||||  |||||||||||||||||||| ||||||||  |||||  ||||||||  |||||||| ||||||||||| || ||||||| |||||||||||||| ||||||||| |||||||| || ||| |              A
  TTTATG  AACCCTTTT ATGT AAAAGTAG  AGTTCAAACGTGGCGAAGGT TAAATCAG  GGTAC  ATATTTTT  TGTAAACC GGGAGTATAAA TT TTAAATT TGAAAATCAGTAAA GTAGTTAAA AACAATCA TG TTG C              
        AA         T    C        AT                    A        AA     AA        CA        A           A  T       A              A         A        -  A   - CTTAGTTCGCAAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End