SE3550439

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6657
  • Mimulus guttatus
  • SE3550439
  • PIF/harbinger
  • To1
  • scaffold_6:12809937-12810220
  • TAA
  • AGGTGGTGTTTGCAAAAGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                     -T    --     ATTATAAGCTTTTTATTTCCACATAATCTGTTTTTAGGTGTTTGCAAAACCGACTTTTCCTTTTGCTTCTCTAAAAATAAGCTGTTTTAAGCTATAATTTTAAAAGC
  AGGTGGTGTTTGCAAAAGCTT  TAAA  AATAG                                                                                                           
  |||||||||||||||||||||  ||||  |||||                                                                                                           A
  TCCACCACAAACGTTTTTGAA  AATT  GTGTT                                                                                                           
AA                     TA    TT     CAATCACTAACACTCAATTCAACTCTAATTCACGAATTAAGATTTTCAACCCCCACAAACGTTTTTTAGACCTTTTAGTTAAATTTATCTTTTCTGTCCATGTAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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