Plant MITE

SE3520441

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6659
Mimulus guttatus
SE3520441
Mutator
M2
scaffold_5:13507691-13507959
TATATTTAA
AGGGTAAATTACGGCCACCCCCCTGAGGTAAGGTCAAATTACAAAAAAACCCTTCATATTTGGGTAATTACATCCACCCCCCTCAACTATGTATTTTCTTACAAAACCCCCCTT

Secondary structure and sequence

TSD TIR

5'

3'

TATATTTA           C     C                             AA      A                T        CTC           T       AAA  C     CATATAGTA    AAT
        AGGGTAAATTA GGCCA CCCCCTGAGGTAAGGTCAAATTACAAAAA  CCCTTC TATTTGGGTAATTACA CCACCCCC   AACTATGTATT TCTTACA   CC CCCTT         GGTA   
        ||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||   ||||||||||| |||||||   || |||||         ||||   T
        TCCCGTTTAAT CCGGT GGGGGATTCTATTCCGGTTTAATGTTTTT  GGGGAG ATAAACCCATTAATGT GGTGGGGG   TTGATACATAA AGAATGT   GG GGGAA         CCAT   
AATTTATA           C     T                             GG      G                T        -AT           C       GAA  T     -------TG    AGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520441

TATATTTAAGGGTAAATTACGGCCACCCCCCTGAGGTAAGGTCAAATTACAAAAAAACCCTTCATATTTGGGTAATTACATCCACCCCCCTCAACTATGTATTTTCTTACAAAACCCCCCTTCATATAGTAGGTAAATTTGATACCGTAAGGGTGGAAGTGTAAGACAATACATAGTTTAGGGGGTGGTTGTAATTACCCAAATAGGAGGGGGGTTTTTGTAATTTGGCCTTATCTTAGGGGGTTGGCCCTAATTTGCCCTATATTTAA

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