SE3550445

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6663
  • Mimulus guttatus
  • SE3550445
  • PIF/harbinger
  • To2
  • scaffold_6:17673414-17673665
  • TTA
  • AGGCCCCGTTTGGTTGGCAAGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                G       AGATT     A   AA    AAATAATCTAATGAGACCCAATTATTTTATTGGAGCTTGAAACGTCCAACAAAAAAAACTCATTCGAAGGCAAGATAAGGCAA
  AGGCCCCGTTTGGTTG CAAGATA     AGCCA GAT  GATT                                                                                   
  |||||||||||||||| |||||||     ||||| |||  ||||                                                                                    
  TCCGGGGCAAACCAAC GTTCTAT     TCGGT CTA  TTGA                                                                                   
AT                G       -----     A   -A    TTTATCAACCTGAATTAAACTACAAACCATAGGAGTTATTTAACGGCCCAGCTGGGCGGTTTTAATTTATTAGTACCGAATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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