SE3520446

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6664
  • Mimulus guttatus
  • SE3520446
  • Mutator
  • M4
  • scaffold_7:4563357-4563857
  • TAATTATAA
  • AGGGTAAATTCCACTTTCCCCCCTTGTACTTTGCCTCGATATCACTTTACTCCCTTCTACTCTCAATTGCATCGATTTCCCCCCTTATACTTGAAAAATTGTCTCAATGTGGCCCTCG

Secondary structure and sequence

TSD    TIR
5'



3'
TAATTATA        T  C         C           C    A             CC          A             C                   T                T  CCATTC   -      C      A       A         C    -GA            AAAAC    CC    CAA                    ---------------ATT    - TGGTGTCATGGA
        AGGGTAAA TC ACTTTCCCC CTTGTACTTTG CTCG TATCACTTTACTC  TTCTACTCTC ATTGCATCGATTT CCCCCTTATACTTGAAAAA TGTCTCAATGTGGCCC CG      GTT TCAGAC TTTGAC TTAACAC GTTTGATCT GTCT   AAATTACAAAAA     CACC  CTCT   TTTAAATAATTATTAAAAAA                  GTGG C            
        |||||||| || ||||||||| ||||||||||| |||| |||||||||||||  |||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||      ||| |||||| |||||| ||||||| ||||||||| ||||   ||||||||||||     ||||  ||||   ||||||||||||||||||||                  |||| |            C
        TCCCATTT AG TGAAAGGGG GAACATGAAAC GAGC ATAGTGAAATGGG  AAGATGAGGG TAACGTAGCTAAA GGGGGGATATGAACTTTTT ACAGAGTTACACCGGG GC      CAA AGTTTG AAACTG AATTGTG CAAACTAGA TAGA   TTTAATGTTTTT     GTGG  GAGG   AAATTTATTAATAATTTTTT                  TCTG T            
AATATTAA        T  T         A           C    C             AA          C             C                   T                -  AACAAT   C      T      G       G         T    GAA            --GCA    -A    ATC                    ATTATTTTTTTTTTTAGT    T GCTCTTTTGTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End