SE3520448

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6666
  • Mimulus guttatus
  • SE3520448
  • Mutator
  • M8
  • scaffold_11:15715985-15716340
  • TTTTTATTT
  • GGGCAAATTACGGCCACCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTATTT                    CTAA C              A    CC      G              A          CAA  -------ATGT        TACGAAAAGACCCCTTCAGAGGTAAATTTAGGGATGTTAATTCGGTAAAACCGGACCAAAATTTTGGTAC
         GGGCAAATTACGGCCACCCC    G TATGGTCAAATTAC AAAA  CCCCTC TGTTTGGGTAATTA AGCCACCCCT   CT           ATTTATCT                                                                      
         ||||||||||||||||||||    | |||||||||||||| ||||  |||||| |||||||||||||| ||||||||||   ||           ||||||||                                                                      G
         CCCGTTTAATGCCGGTGGGG    C ATACCAGTTTAATG TTTT  GGGGAG ACAAGCCCATTAAT TCGGTGGGGG   GA           AATGTATT                                                                      
TTTATTTTT                    ACCA -              C    TT      A              G          -AG  AATTTTATAAG        TTAAATACATTAAACCAATAAATGGCTTGGTTTAGCATATAAAACAAGCCATTTACCATACTTTACAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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