SE3520449

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6667
  • Mimulus guttatus
  • SE3520449
  • Mutator
  • M16
  • scaffold_10:16387249-16387458
  • CAAAGATAC
  • GG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAGATAC  -CTCC                                  A                   C       T      ---TCTAAAA    TAA   TA
         GG     TTCGATCCTACACCCGGTGATAAACATTGGGTGG TCTTCTGCTGCCATGTGTC CTTTTTT TATTTT          CCCC   AGG  
         ||     |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||          ||||   |||  A
         CC     AAGCTGGGATGTGGGCCACTATTTGTGGCCCACC AGAAGACGACGGTGCACAG GAAAAAA ATAAAA          GGGG   TCC  
 CATAGAAA  TAAAC                                  C                   A       C      TATTATATAA    CGA   CA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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