SE3520450

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6668
  • Mimulus guttatus
  • SE3520450
  • Mutator
  • M18
  • scaffold_4:17003058-17003469
  • TAAAATTTA
  • TAAAATTTAGGGAAAATTGCACGTCACCCCCTATAAATTTGTTATTTTCGTACTTTACCCCTCAAAATTGAGAAATGCGAATGCCCCCCATCAAAATGTCATTCTTGTTGCACATTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
            A   T     G    C            G               A      --     T         GA   C        -       C   CTT       A    C   A   CAAAATTTTGATGGATTATTCACTGGAATTGAGTGTTTTTGTTGCACGTTGCCCGTTTAAATGTTATTTTTTTTGTACCTT
TAAAATTTAGGG AAA TGCAC TCAC CCCTATAAATTT TTATTTTCGTACTTT CCCCTC  AAAAT GAGAAATGC  ATG CCCCCATC AAAATGT ATT   GTTGCAC TTGC CCG TAG                                                                                 
|||||||||||| ||| ||||| |||| |||||||||||| ||||||||||||||| ||||||  ||||| |||||||||  ||| |||||||| ||||||| |||   ||||||| |||| ||| |||                                                                                  
ATTTTAAATCCT TTT ACGTG AGTG GGGATATTTAAA AGTAAAAGCGTGAAA GGGGGG  TTTTA TTTTTTACG  TAT GGGGGTAG TTTTATA TAA   CAACGTG AACG TGA TCT                                                                                 
            G   T     A    A            A               -      AT     T         --   A        G       A   AAC       A    -   -   TCGGTTAAAAATAACCCGTAACAGGTTGTTTTTATTGTAAAATTTCTCCGTTGCACGTCTTTTGATTACAAAAATTCCCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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