SE3550452

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6670
  • Mimulus guttatus
  • SE3550452
  • PIF/harbinger
  • To2
  • scaffold_13:15454224-15454475
  • TAA
  • AGGCCTCGTTTGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                TCAAGATA          A   AA           CTAATGAAAACCCAATTA     TCGGACCCCGTGACATCCAACAAAAAAGCTCCCTCGAAAGCAAGATAAGACAAGAAAAACCA
  AGGCCTCGTTTGGTTG        AGATTAGCCA GAT  AATTAAATAAT                  TTTTA                                                              
  ||||||||||||||||        |||||||||| |||  |||||||||||                  |||||                                                               
  TCCGGAGCAAACCAAC        TCTAATCGGT CTA  TTGATTTATTA                  CCCTG                                                              
AA                -----CCC          A   -A           ------------------     AAACAAACTACAAACCATAGGGGTTGTTGAACGGCCCAGCTGGGCGTTTATAATACAATAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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